Novel way found to kill dormant TB bacteria in stem cells

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Delhi-based researchers have found that TB bacteria promote rapid synthesis of lipids inside mesenchymal stem cells and hide within the lipid droplets so created. They found that TB bacteria hijack the cellular mechanism to stop the stem cells from replicating and turn themselves dormant. They found a way to rid the stem cells of bacteria and prevent reactivation.

Delhi-based researchers have found that inhibiting lipid synthesis inside stem cells that produce bone cells (mesenchymal stem cells) can help in killing TB bacteria that are found inside the stem cells in a dormant state and remain safely shielded from the host immune system and TB drugs. While TB bacteria inside the macrophages actively divide, the bacteria inside mesenchymal stem cells lie dormant and also make the stem cells less likely to replicate thus surviving for an extended period of time. Ex vivo studies with human stem cells and work on mice showed that macrophages and stem cells are programmed very differently to support active and dormant TB bacteria infection.

A team led by Prof. Gobardhan Das from the Special Centre for Molecular Medicine at the Jawaharlal Nehru University (JNU) found that TB bacteria are free in the intracellular fluid (cytosol) of the mesenchymal stem cells while they are surrounded by the macrophage cell membrane on being engulfed. This allows the bacteria to promote rapid synthesis of lipids inside the stem cells and hide within the lipid droplets so created. Also, the stem cells have highly efficient efflux pumps that expel a variety of drugs thus proving a safe haven for TB bacteria.

The results were published in the Journal of Clinical Investigation.

While it was already known that mesenchymal stem cells serve as reservoirs of dormant TB bacteria, the mechanism by which bacteria adapt to stem cells and survives for long period was not known.

Hijacking cellular mechanism

In vitro studies using human mesenchymal stem cells and macrophages and mice model studies helped us understand how TB bacteria hijack the cellular mechanism to stop the stem cells from replicating and turn themselves dormant,” says Prof. Das. “The bacteria instruct the stem cells to synthesise lipids and hide inside them. The stem cells don’t kill the bacteria that are inside lipid droplets.”

In vitro studies found sustained expression of genes controlling dormancy in the bacteria isolated from stem cells while genes that promote replication were expressed in bacteria isolated from macrophages. Mouse mesenchymal stem cells and macrophages too showed similar behaviour. In vitro studies using human stem cells showed the bacteria inhibiting stem cell replication.

Inhibiting lipid synthesis

The researchers used inhibitors to block lipid synthesis and found reduced expression of genes which regulate dormancy of TB bacteria and replication of stem cells. “This helped confirm that TB bacteria induce lipid synthesis in stem cells and hide inside the lipid cells to escape from anti-TB drugs,” says Samreen Fatima from JNU and the first author of the paper.

“Using a drug that inhibits lipid synthesis will prevent dormancy of TB bacteria and make the bacteria susceptible to anti-TB drugs,” says Fatima. But killing the bacteria and preventing disease reactivation can be achieved by inducing autophagy (mechanism by which cells removes unnecessary or dysfunctional components) along with anti-TB drugs.

Inhibiting autophagy

Inhibiting the cell’s autophagy mechanism is one of the ways by which TB bacteria survive inside host cells. The researchers treated human macrophages and stem cells infected with TB bacteria with an anti-TB drug (isoniazid) and/or rapamycin. While isoniazid eliminated replicating bacteria found in macrophages, rapamycin induced autophagy in stem cells to kill the microbes. Similar results were obtained in mouse models too.

“In mouse models, inducing autophagy led to elimination of TB bacteria from mesenchymal stem cells. And addition of autophagy-inducing drug along with isoniazid led to sterile cure of TB and prevention of disease reactivation,” says Fatima.

“This discovery paves the way for finally getting to grips with the scourge that is tuberculosis in its dormant state, and whose resurgence poses a threat to not only treating TB but also to disease control,” says Prof. Anand Ranganathan who is a co-author of the study.

Published in The Hindu on October 26, 2019

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