About half a dozen IISc researchers have 33 papers listed on Pubpeer for image duplication. Most of the duplication is within the same paper. With 13 papers, Akhil R. Chakravarty has the most number of problematic articles. A few researchers have already got or are about to get an erratum published.
India’s premier institution Indian Institute of Science (IISc), Bengaluru too seems to have problems with images in papers published in journals. At last count, 33 papers published by half a dozen researchers have images that have been duplicated. While most of the image duplication is within the same paper, a couple of images have been reused in more than one paper. None of the images appear to have been manipulated.
All the problematic images have been posted by independent researchers on Pubpeer website. The Pubpeer website allows independent scientists to publish post-publication review of scientific papers. Once a comment is posted on the website, the concerned authors are automatically alerted by the website.
All the papers listed on Pubpeer where the authors have already not admitted to mistakes in the images were cross-checked by Dr. Elisabeth Bik. Dr. Bik is a Science Consultant at Harbers-Bik LLC, San Francisco, California and an expert in identifying duplication and manipulation in images.
Leading the pack with 13 papers
With 13, Prof. Akhil R. Chakravarty from the Department of Inorganic and Physical Chemistry has the most number of papers from the institution to be listed on the website. He is the corresponding author in all the 13 papers. Erratum has already been published in the journals for six of the 13 papers.
Prof. Avadhesha Surolia from the Molecular Biophysics Unit at IISc has four papers with problematic images. While he is the corresponding author in three papers, he is only a co-author in the fourth. In a note on the Pubpeer website, the journal EMBO Molecular Medicine, which published one of Prof. Surolia’s paper last year, says it is “looking into this issue” of image duplication.
“All the mistakes/errors that were there in the papers [have been] rectified now and most of the corrections have already appeared in the respective journals. Some are in the process of publication as erratum/corrigendum/addition-correction,” Prof. Chakravarty mentions in email to me. “All the alerts came at a time in December 2018. We [have been] successful in rectifying the errors within six months time.”
On why 13 papers from his group have problems with images, Prof. Chakravarty says: “These papers are during the last 10 years. There is no problem with the majority of the images. Only problem was how they were presented. That gave an impression that the gel lanes are copied. Wherever there were serious mistakes, we accepted that and requested the editors to permit us to submit the corrections. With due permission, we submitted the corrections and got the mistakes corrected… The conclusions of the papers remain the same.”
“As the senior author of the publications, I accept the blame for these errors,” he adds. “I have asked my students to be very careful when they get the images from the institute facilities. I have also requested my collaborators to thoroughly check the images. I am looking carefully [at] the data from my research group. We are now trying to get the software for checking image duplication.”
In the process of getting it corrected
In an email to me, Prof. Sathees Raghavan from the Department of Biochemistry at IISc, who has two papers listed on Pubpeer says: “In one of the papers two images (control and one of the treated sample) were duplicated. Upon crosschecking the originals, we found out that this happened during copy pasting of images. There will not be any change in the conclusions drawn. Nevertheless, I am in the process of correcting this in the journal.”
“The second problem pointed out was use of common control for Comet assay used for three compounds published as independent articles in journals. While going through the experimental note book of the Postdoc who conducted the study, we now figured out that Comet assay for all three compounds was done at the same time and therefore a common control was used. In this scenario, I am contacting the journal to see whether a correction is required,” Prof. Raghavan adds. “Although, all these were unintentional errors, I have brought several new rules to lab to ensure that such errors are not repeated.”
Does not affect the conclusion
Responding to an email, Prof. Annapoorni Rangarajan from the Department of Molecular Reproduction, Development and Genetics defends the Western blot image in one of her papers posted on Pubpeer. She says: “Due to the dearth of space allocated by the journals, the whole blots are not usually shown in the manuscript and typically only the portions of the blots containing the data are provided. Such presentation of the Western blots, though conventionally accepted in the scientific community, may mislead the inexperienced readers but the Reviewers of the manuscripts who are expert in these techniques understand and approve of them.”
Admitting to duplication of images in another paper of hers, Prof. Rangarajan says: “There has indeed been an error in the topmost panel in Fig. 2d. While assembling 36 images in this sub-figure, one image has been inadvertently shown twice. We will provide the journal with the correct image and request the editor to publish an erratum. This will in no way affect the conclusions drawn in the paper.”
Problematic papers listed on Pubpeer website
1) Curcumin “Drug” Stabilized in Oxidovanadium(IV)-BODIPY Conjugates for Mitochondria-Targeted Photocytotoxicity (Erratum published)
Utso Bhattacharyya, Brijesh Kumar, Aditya Garai, Arnab Bhattacharyya, Arun Kumar, Samya Banerjee, Paturu Kondaiah, Akhil R. Chakravarty
Inorganic Chemistry (2017)
2) Anaerobic Photocleavage of DNA in Red Light by Dicopper(II) Complexes of 3,3′-Dithiodipropionic Acid (Erratum published)
Debojyoti Lahiri, Tuhin Bhowmick, Biswarup Pathak, Oottikkal Shameema, Ashis K. Patra, Suryanarayanarao Ramakumar, Akhil R. Chakravarty
Inorganic Chemistry (2009)
3) Mitochondria localizing high-spin iron complexes of curcumin for photo-induced drug release (Erratum published)
Avishek Jana, Brijesh K. Verma, Aditya Garai, Paturu Kondaiah, Akhil R. Chakravarty
Inorganica Chimica Acta (2018)
4) Metal-based netropsin mimics showing AT-selective DNA binding and DNA cleavage activity at red light (Erratum published)
Ashis K. Patra, Tuhin Bhowmick, Suryanarayanarao Ramakumar, Akhil R. Chakravarty
Inorganic Chemistry (2007)
5) Photocytotoxicity of copper(II) complexes of curcumin and N-ferrocenylmethyl-l-amino acids
Tridib K. Goswami, Sudarshan Gadadhar, Bappaditya Gole, Anjali A. Karande, Akhil R. Chakravarty
European Journal of Medicinal Chemistry (2013)
Ashis K. Patra, Munirathinam Nethaji, Akhil R. Chakravarty
Journal of Inorganic Biochemistry (2007)
7) Red-light photosensitized cleavage of DNA by (l-lysine)(phenanthroline base)copper(II) complexes
Ashis K. Patra, Munirathinam Nethaji, Akhil R. Chakravarty
Dalton Transactions (2005)
8) Ternary iron(III) complex showing photocleavage of DNA in the photodynamic therapy window (Erratum published)
Mithun Roy, Sounik Saha, Ashis K. Patra, Munirathinam Nethaji, Akhil R. Chakravarty
Inorganic Chemistry (2007)
9) Photodynamic effect in near-IR light by a photocytotoxic iron(III) cellular imaging agent
Uttara Basu, Imran Khan, Akhtar Hussain, Paturu Kondaiah, Akhil R. Chakravarty
Angewandte Chemie International Edition (2012)
Mithun Roy, Balabhadrapatruni V. S. K. Chakravarthi, Chelliah Jayabaskaran, Anjali A. Karande, Akhil R. Chakravarty
Dalton Transactions (2011)
11) Nuclear targeting terpyridine iron(II) complexes for cellular imaging and remarkable photocytotoxicity (Erratum published)
Uttara Basu, Imran Khan, Debasis Koley, Sounik Saha, Paturu Kondaiah, Akhil R. Chakravarty
Journal of Inorganic Biochemistry (2012)
Samya Banerjee, Akanksha Dixit, Anjali A. Karande, Akhil R. Chakravarty
Dalton Transactions (2016)
13) Photocytotoxic oxovanadium(IV) complexes of ferrocenyl-terpyridine and acetylacetonate derivatives (Erratum published)
Babu Balaji, Babita Balakrishnan, Sravanakumar Perumalla, Anjali A. Karande, Akhil R. Chakravarty
European Journal of Medicinal Chemistry (2015)
Archita Mishra, Ashalatha S Mamidi, Raju S Rajmani, Ananya Ray, Rajanya Roy, Avadhesha Surolia
EMBO Molecular Medicine (2018)
15) Insulin signaling pathway protects neuronal cell lines by Sirt3 mediated IRS2 activation
Neha Mishra, Sonam Lata, Priyanka Deshmukh, Kajal Kamat, Avadhesha Surolia, Tanushree Banerjee
BioFactors (2018)
16) Alzheimer’s and Danish dementia peptides induce cataract and perturb retinal architecture in rats
Bhanuprakash Reddy, P. Yadagiri Reddy, Avadhesha Surolia
BioMolecular Concepts (2017)
Namita Gupta, Nirmala Jagadish, Avadhesha Surolia, Anil Suri
American Journal of Cancer Research (2017)
Shamik Majumdar, Vishwas Mishra, Somesh Nandi, Mudabir Abdullah, Anaxee Barman, Abinaya Raghavan, Dipankar Nandi, Sandhya S. Visweswariah
Infection and Immunity (2018)
Santosh K. Misra, Parikshit Moitra, Paturu Kondaiah, Santanu Bhattacharya
Colloids and Surfaces B Biointerfaces (2016)
Ila Pant, S. Girish Rao, Paturu Kondaiah
Scientific Reports (2016)
Gargi Ghosal, K. Muniyappa
Journal of Molecular Biology (2007)
P. Manjunath, Neelesh Soni, Pavana L. Vaddavalli, Dipeshwari J. Shewale, M. S. Madhusudhan, K. Muniyappa
Biochemistry (2016)
23) A plant-derived dehydrorotenoid: a new inhibitor of hepatitis C virus entry
Mihika Bose, Mohini Kamra, Ranajoy Mullick, Santanu Bhattacharya, Saumitra Das, Anjali A. Karande
FEBS Letters (2017)
Rekha Gautam, Bhagawat Chandrasekar, Mukta Deobagkar-Lele, Srabanti Rakshit, Vinay Kumar B. N., Siva Umapathy, Dipankar Nandi
PLOS ONE (2012)
25) Common host genes are activated in mouse brain by Japanese encephalitis and rabies viruses
S. Saha, P N Rangarajan
Journal of General Virology (2003)
A N Paranjape, T Mandal, G Mukherjee, M V Kumar, K Sengupta, A Rangarajan
Oncogene (2012)
Sravanth Hindupur Kumar, Annapoorni Rangarajan
Journal of Virology (2009)
Kumar Somyajit, Shreelakshmi Subramanya, Ganesh Nagaraju
The Journal of biological chemistry (2012)
Kumar Somyajit, Shivakumar Basavaraju, Ralph Scully, Ganesh Nagaraju
Molecular and Cellular Biology (2013)
Uzma Saeed, Lalitha Durgadoss, R. Khader Valli, Dinesh C. Joshi, Preeti G. Joshi, Vijayalakshmi Ravindranath
PLOS ONE (2008)
Deepti Abbey, Polani B. Seshagiri
Differentiation (2017)
S. Shahabuddin, Mridula Nambiar, Bibha Choudhary, Gopal M. Advirao, Sathees C. Raghavan
Investigational New Drugs (2010)
33) Novel derivatives of spirohydantoin induce growth inhibition followed by apoptosis in leukemia cells
C.V. Kavitha, Mridula Nambiar, C.S. Ananda Kumar, Bibha Choudhary, K. Muniyappa, Kanchugarakoppal S. Rangappa, Sathees C. Raghavan
Biochemical Pharmacology (2009)
F@@@ these bullshit hypocrites and rusticate them from the institute. They are criminals…